Scaffold Ga0208667_1000148

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000148
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32551
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (87.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F038713	Metagenome	165	Y
F069356	Metagenome	124	N
F082664	Metagenome	113	Y
F101909	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100014839	F069356	N/A	MVCTGKLQTMTQYKQDILDIETDFQCEVEEFVRQDKDFSEIYALAMELLSTDKYKDLKLNDQYHENSVYDLIQEMCDRYHE
Ga0208667_100014844	F038713	GGAGG	MIFVKFTIDNGGIEYLDYAWFKDYGLAHYENGESITDKDIIRDVYGEGRSDHDFEENFNEETNVYTDYDDDTIAVHRVQEMTQKELDVLVKMGVLYR
Ga0208667_100014847	F024653	AGGAG	MSRDIDTIPTVPRHIVSFKILVEWSDNPKLVELENEMGNFLDNTFNDWLREIEDEENLNE
Ga0208667_100014848	F101909	AGAAGG	MMTEEKKKYHKRRGMSERILDVLSDGHWHSVQEVSKRIGYLETGTSAGIRTLRKKPYGKKNVVGKWLGGVYHYRLEEGEYGEEPLSYDLEKTVEVDLV
Ga0208667_100014849	F082664	AGGAG	MNTFSEWINRELKLKEKEDMATTKKKEVEVPTITDLQLVFVNRVKNLLQNIEESGVEYITYSDISKLDKAYDNVVEEANLKHQQMIIEHGEDKGTVHRAIWKDIVRADHPNIYVEKDNYD