Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1000142 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 33147 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (43.90%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006772 | Metagenome | 365 | Y |
F040392 | Metagenome | 162 | N |
F044802 | Metagenome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208667_10001424 | F040392 | GAGG | MCYGTTVIYRAVTEKQTNATIKTAHNYGGAFISKLSEAALLADPRNRSRVLDAFPEIVSKYGPGSAFYNEYL |
Ga0208667_10001427 | F044802 | N/A | MSDSAALYRAQENLRMMETCPTWFDHLDKVEAAMAEESRVYDIRVAAGWELDEGGWYAPCPETDQMIHEWDWLDLGLAYPEASK |
Ga0208667_10001429 | F006772 | AGGAGG | MPLTGRQIVMERLKKAIRTATAGDLQRAAMFLEEAKKVRAGCTNQRAQARRAQSTAWKKKTDSSITW |
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