Scaffold Ga0208667_1000040

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000040
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53804
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (90.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F000913	Metagenome / Metatranscriptome	838	Y
F017163	Metagenome / Metatranscriptome	242	Y
F101064	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100004025	F101064	GGTGG	MADKSVHDLELELVKFQTQQDHLVDSVDKLKDDMKEVKIILFQAKWMIVGALLVAGLMNSDMLMEAIIGLAR
Ga0208667_10000403	F000913	AGGAG	MKHWELEHNGDYLRIEWNESATFNLQTPIQGQWVDYHCFTCYGIDNEQEALEHAMEVLEGVE
Ga0208667_10000404	F017163	AGGGGG	METITLELPEFWATALFYDDTSGFEYEDEKPFQEFCQWAVKNYGTSEPVDMDEEPQFMRYHDAERFGVLACNVHCYTFIVNNGNPTTSAMTTLAHTMK
Ga0208667_100004041	F000256	AGCAGG	MADGVSGVGNAPFNVGSDIHAQTRVRERIETHLAEQRVEKEHRANHSHLEALVKQRLDLQESYDRFGRKTNADRPQGTKLNIEV