Scaffold Ga0207887

Basic Information
Taxon OID	3300025069 Open in IMG/M
Scaffold ID	Ga0207887_1004363 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025069 Open in IMG/M

Scaffold ID

Ga0207887_1004363 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2163
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2163

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.9853	Long. (^o)	-145.0838	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.9853

Long. (^o)

-145.0838

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F010690	Metagenome / Metatranscriptome	300	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10043631	F010690	N/A	GATSQFRIFGTNQVAPTVGTNLACALHYSTTPPTRPEHFYHKPDDESNFTTATTTTGNNFTINDGMWLEDMYLSVFTAVYTVSQSLTGYGSLTSNDFGNSLPLKVPMQPGCASLGATGTQGILAMASYHNTHMPMKTSCQINTAFTNDITQTGTTSFIMGVGYTKQ
Ga0207887_10043632	F002100	GAGG	MSSFKPALIKPVYDVANFGHDNSLPLNCLSGSTATLTPSTATFVQVLEDSRVPIDEVDLFITDSDKMAMVHAGDDTDFDKSWEWRPDMSAQAYQISFNFAVGMKVSAYTSGNFKISDVQVICKQIGGGEGDFTYLNKIIDPGMTNMAATGEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQTGIIPLFCYFSSAVPKTWTTSSVLMHIHADLAHAFPIFRDQDNMNMLDTGIGL
Ga0207887_10043633	F021554	AGG	MIIEEIPFFVEFVILGIVLGFGYGFTKLFLNHAKDKNKIVRKERKAEKDNNLENELDKYLDNASAIIHHLESEIANLKEKGSTPEQTQRLESELQQAKTLQKYEPIIRILGKPALKKVMSILDRV
Ga0207887_10043634	F002150	GGA	VVAIPATILAKEIGKRGTKASGEFLEEKLGYNFVDLVTKLALFYIIAFMIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTYASTPTAPGKYNPPGWDRPYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTMAIFSLMGLMIGV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207887_1004363

Overview

Ecosystem & Geography

Associated Families

Sequences