Scaffold Ga0207887_1002741

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1002741
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2774
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F007005	Metagenome	360	Y
F011673	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10027413	F011673	GGA	MTREHSLKILPIYLQPRILSAVSYIHKSLNQEIALERINRVSKKLSDREMLYVMSLLAFDNLLDMVKESDDFKKFVRVKRTIH
Ga0207887_10027414	F000423	GAGG	MTLSKAIFYIKYYAKKHDCIIERMATLDENCFEGVHKKFGYPYKKYIDIQATEERNNGQPQYRTASKKWEINDTRTLT
Ga0207887_10027415	F007005	N/A	MFNNNERDKMDKTILVVEITKYSSGKNIYAIKKHADTLDKASEYIVALKNLNEDKDIIYKLFNEFGQFEVEQIQKVKEKEVANNDTF