Scaffold Ga0207887_1001135

Overview

Basic Information

• Taxon OID: 3300025069
• Scaffold ID: Ga0207887_1001135
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4480
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9853
  • Long. (^o): -145.0838

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207887_10011351	F002667	N/A	QIIIRLVNGFCELFLTLVRVEARVSRVKSKYYLYNYGMEVLSAALILVACVSAGLSCIFISRNRGAINKHSRQRIKDYEADIRYLGDIKKADAADYRQEILRLKGSINKMKQGTTVTDTDMKNSGLGEVIMQLIPKKYQKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTNNKQAQPGTETEAISSL
Ga0207887_10011356	F017252	AGGTGG	VPQIIQGYRVTVKPNDTTAESTFVADIVAAGAAATTVHYPTLYRAIAISLAIKNQDAANNCTFSVNGQPAVTLSAGSDQNINGQNIVSVQVTPGAAGSVDLLAQVTPMYLSTEAARFRTDRG