Scaffold Ga0208012_1008308

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1008308
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y
F029400	Metagenome	188	Y
F062171	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10083082	F024106	GGA	MEKSTFHSSFQVGDLVTLKHHPGAPLAVVVSLDAIVLDRIQIQFFDTDRPEMAAPGHWKVVSRNENR
Ga0208012_10083083	F014465	AGGAG	MKLRGMTMIGALVRDCSMIMKIVTGYKCSNRGEYIQFAGDHQTAWHPLDSFEILSMED
Ga0208012_10083087	F062171	GAGG	MKIGDLVSYGTLPHWKLEGCLGILVRKLQWNDTWIEGINWDGQPAWWIQYVGDEAPTWNYEEELTLVRKGN
Ga0208012_10083088	F029400	N/A	PEAWGTPLKDRPLGVVVEIELSPRGTNPLVDVLFPTDDIPYSSNIKDFEVVNENW