Scaffold Ga0208012_1006399

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1006399
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2288
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016063	Metagenome / Metatranscriptome	250	Y
F030569	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10063993	F030569	N/A	VRKLKCQHCDNPNPENWFFCRDCGKRASAPKFTTNSFVISEAGKRTDVEFNTISYDESINKMNKADKRWKGF
Ga0208012_10063995	F016063	AGGAGG	MYTDKINKNSGAFETGEKAFQKIDNSAALARTLKASESGTLFAVDMSAVDNNVTLTLPTASDAVAGVNYDFCFTVNCDDDADFIVTTGANGTDIYGYIVAGAANSTVDDVDGLSKITIDGSVSQAIEGLRMTFICDGVNWHLSGYVPVAIGTTVIVESASA