Basic Information | |
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Taxon OID | 3300025066 Open in IMG/M |
Scaffold ID | Ga0208012_1003739 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3300 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028039 | Metagenome / Metatranscriptome | 193 | Y |
F041493 | Metagenome / Metatranscriptome | 160 | Y |
F042628 | Metagenome | 158 | Y |
F086164 | Metagenome / Metatranscriptome | 111 | N |
F104992 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208012_10037392 | F041493 | AGGAG | MTTQQQDYYTKIIDSNDEHLYTTIYDSVSGDPFRVKTERVGHYLSKIKKESKLEGKQLVFSGEWIPSFVKTKQEIIGSPSSGKTNGVAPVSQVNVGKRRRGRRGRKK |
Ga0208012_10037393 | F028039 | AGGAG | MTTDIKTERWETIIKEIKFENRWKTTLEKHLKDNNLTELPEPEWSEDPTMAYIYLPARSLNGDAVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASKDEEQLPKMETEKPKPQKIKLPKIGE |
Ga0208012_10037394 | F104992 | AGGAG | MTVGTRQYESVNSTTTTMSGNADLTLTAASDKLQIVDPGGSARNLDLVFVDSSETGVTTGFAEVYIQNEADADEGITIRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN |
Ga0208012_10037396 | F086164 | AGGAG | MAFGHEKLAVDATVRSLTVPNDVNFAQIKVETAAIRYRIDGTDPATAEGVLVSAGDAFTVYGADTLAQIKMVEATSTDSVINVSYGTANTGIHGVIINTAA |
Ga0208012_10037397 | F042628 | AGTAGG | MGKYTKANVNNIFKEEPEISVSEHTVTKKGKKMKMVIPEGKIGYGDVESHAQMAGDLATKHSDDTKAGQKAYEEVRKHRSEDTGSTVEENELKMAYAKMQGRMPVINTFNIQDPVTGEVVAQEILFMKTDKSGLTRPLKIRVDVQTGKTTEVPV |
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