Scaffold Ga0208012_1003739

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1003739
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3300
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F042628	Metagenome	158	Y
F086164	Metagenome / Metatranscriptome	111	N
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10037392	F041493	AGGAG	MTTQQQDYYTKIIDSNDEHLYTTIYDSVSGDPFRVKTERVGHYLSKIKKESKLEGKQLVFSGEWIPSFVKTKQEIIGSPSSGKTNGVAPVSQVNVGKRRRGRRGRKK
Ga0208012_10037393	F028039	AGGAG	MTTDIKTERWETIIKEIKFENRWKTTLEKHLKDNNLTELPEPEWSEDPTMAYIYLPARSLNGDAVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASKDEEQLPKMETEKPKPQKIKLPKIGE
Ga0208012_10037394	F104992	AGGAG	MTVGTRQYESVNSTTTTMSGNADLTLTAASDKLQIVDPGGSARNLDLVFVDSSETGVTTGFAEVYIQNEADADEGITIRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN
Ga0208012_10037396	F086164	AGGAG	MAFGHEKLAVDATVRSLTVPNDVNFAQIKVETAAIRYRIDGTDPATAEGVLVSAGDAFTVYGADTLAQIKMVEATSTDSVINVSYGTANTGIHGVIINTAA
Ga0208012_10037397	F042628	AGTAGG	MGKYTKANVNNIFKEEPEISVSEHTVTKKGKKMKMVIPEGKIGYGDVESHAQMAGDLATKHSDDTKAGQKAYEEVRKHRSEDTGSTVEENELKMAYAKMQGRMPVINTFNIQDPVTGEVVAQEILFMKTDKSGLTRPLKIRVDVQTGKTTEVPV