NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1002811

Scaffold Ga0208012_1002811


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1002811 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4038
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031873Metagenome181N
F034992Metagenome173N
F072747Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10028111F034992N/AIGKTTSQLFLMIMSAKLYDWKWLMYCPENEPVGDLMIDIAEMYCGKTADKDFSDRIDQQEYLRAIDWAYEHFTVLTFDETPTVEDVLGAFEEYMQVVKVDGVSVDPLNDLRAAEKQSKYDYYYDALSNIRRFIKRHKVSFYLVVHPGTAANRRRNDDGTRPAPNMSDVEYGAMFGNRADNFIVFHRNPQSEKWNVTEIHIQKVKFQKLVGVPTPELDPICLFYSYQKRRFQYLNENGSLVDPIQVADNRVKPSNVF
Ga0208012_10028112F072747N/AMSDEITMKSIQLLRDCDPNLDEMGSMDKFISHQLELAKMRDQYVSYSNHPQADKMKKRLEVFEESSQAFTWVYFMMMQFKREKVLAQANELEMANAVIELKYELDLLTKLNNDE
Ga0208012_10028113F031873N/AMMNKKELELLEKFALKHNVECKPTKGETAFWDFTYEWDNRKFYCEMKQRNFTLDYAIENYAEGLLLEMHKYERILRRTKNEKAAQGLYFNFFSDNKALVFNLNKMKIDKWQWRTMPETTEFNKKKFVYKYVTFLDYSKGKLFYI

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