Scaffold Ga0208012_1002811

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1002811
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4038
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031873	Metagenome	181	N
F034992	Metagenome	173	N
F072747	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10028111	F034992	N/A	IGKTTSQLFLMIMSAKLYDWKWLMYCPENEPVGDLMIDIAEMYCGKTADKDFSDRIDQQEYLRAIDWAYEHFTVLTFDETPTVEDVLGAFEEYMQVVKVDGVSVDPLNDLRAAEKQSKYDYYYDALSNIRRFIKRHKVSFYLVVHPGTAANRRRNDDGTRPAPNMSDVEYGAMFGNRADNFIVFHRNPQSEKWNVTEIHIQKVKFQKLVGVPTPELDPICLFYSYQKRRFQYLNENGSLVDPIQVADNRVKPSNVF
Ga0208012_10028112	F072747	N/A	MSDEITMKSIQLLRDCDPNLDEMGSMDKFISHQLELAKMRDQYVSYSNHPQADKMKKRLEVFEESSQAFTWVYFMMMQFKREKVLAQANELEMANAVIELKYELDLLTKLNNDE
Ga0208012_10028113	F031873	N/A	MMNKKELELLEKFALKHNVECKPTKGETAFWDFTYEWDNRKFYCEMKQRNFTLDYAIENYAEGLLLEMHKYERILRRTKNEKAAQGLYFNFFSDNKALVFNLNKMKIDKWQWRTMPETTEFNKKKFVYKYVTFLDYSKGKLFYI