Scaffold Ga0208012_1000294

Overview

Basic Information

• Taxon OID: 3300025066
• Scaffold ID: Ga0208012_1000294
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18945
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (46.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047372	Metagenome / Metatranscriptome	150	Y
F089531	Metagenome / Metatranscriptome	109	Y
F098014	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_100029412	F098014	GAG	MSDFLYSEESFMLKQAVCKLMEVSLELGNNRGKVLNGEFKKMDDLLNLMGRVKNNMEKKNEYIRI
Ga0208012_100029416	F047372	GAGG	MPKNKKNKKYYLIESEKRKWSYGAFPHTEEGLTEAKKYLINLQKKTDEKLEIIEK
Ga0208012_100029420	F089531	GGA	MQQKNPAYAEIMSHNVKMIGADVHVIKNGGWRGKVEKVIDEEYFLISRFDNPSVTEKISMYDIRSLSYETL