Basic Information | |
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Taxon OID | 3300025066 Open in IMG/M |
Scaffold ID | Ga0208012_1000294 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18945 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (46.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.51 | Long. (o) | -76.2 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F047372 | Metagenome / Metatranscriptome | 150 | Y |
F089531 | Metagenome / Metatranscriptome | 109 | Y |
F098014 | Metagenome / Metatranscriptome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208012_100029412 | F098014 | GAG | MSDFLYSEESFMLKQAVCKLMEVSLELGNNRGKVLNGEFKKMDDLLNLMGRVKNNMEKKNEYIRI |
Ga0208012_100029416 | F047372 | GAGG | MPKNKKNKKYYLIESEKRKWSYGAFPHTEEGLTEAKKYLINLQKKTDEKLEIIEK |
Ga0208012_100029420 | F089531 | GGA | MQQKNPAYAEIMSHNVKMIGADVHVIKNGGWRGKVEKVIDEEYFLISRFDNPSVTEKISMYDIRSLSYETL |
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