Scaffold Ga0208300_102919

Overview

Basic Information

• Taxon OID: 3300025061
• Scaffold ID: Ga0208300_102919
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4349
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F061374	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208300_1029191	F002667	N/A	MEEVLSASLILVASICAGLSCVFIARNRGSINKHSKQRIKDYESDIKYLGEVKKADAAEYREEILRLKGSINKMKQGNTVTDTDMANSGLGEVIMQLIPNKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANNQQTRPKSENQGTDTL
Ga0208300_10291910	F061374	GGAGG	MDWMNAPTKVAQEAGRNVGGIKAAKTINLQISYWALLEQIRSKKGFKNGNETMCYVIMEKAIELGLETG
Ga0208300_1029197	F017252	AGGTGG	MPQVIQGYRVTTKPSDTTAESTYVSDIVAAGAAATTVHYPAQYRSIAISLAIKNQDGANACTFSVNGQPAISLSAGADQNINNQSIVSVQVTPGAAGTVDLLAQVTPMYLTSEKTRFDLARG