NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_102879

Scaffold Ga0208018_102879


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_102879 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3077
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087067Metagenome / Metatranscriptome110Y
F097168Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208018_1028791F097168N/AMAIVFKEEGHVYESVDQDKINWTSVTSFVGMFKPKFDAKAQAKK
Ga0208018_1028798F087067N/ATTQDAYSVVYKLIAILYILLCNVAYAQDCSPYKSPKNYLLDNNKSAAIGYVACLHAAGVVAEVGYDRMFVGVLAMGDGHHGATYSFLQYEIPYGRSRMYIGPAYRLNHNSSLLIGRAGFDYRLYRRVYSSASVLQINRNLNYLHVGVKIIL

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