Scaffold Ga0208018_100918

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100918
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6533
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050411	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1009184	F050411	AGGA	MACDNIYDAFRVATEHLGDELYRRASFSSIWGNLIPRGEFPKHVGLTKSVFEMGNAYPTTDERTWDSYTLANGSNAGACAYNFQDYTVGYDELTYSPTHFQMRGPLLCKDEMNFSHLAPQFLNGYVEELTKLVQVELDNKLMKEYYDKVPKAVMTAAFPITAAGAGLTALPEATSDLTQEALDKAYVHLIHKRASNPDSNGFVSLDSGGPLFSLYLGMEASQAIILNNAEFRKDLREGSMNSELFRRLGANTSIKGFRHLINPLPPRFTFSGGTYTRVNTFADVSGSKGTYQDINPSYLDESSAPYEAAFVLSPDVMAWDWVRPDSQVGSTSWKPQSYMGDWQFITGDEACSTDGSGYDPFHKYGRHIAEMSGAAKPGANRSAGLMIIYKRCHLSSLTTVTCT