Scaffold Ga0208018_100365

Overview

Basic Information

• Taxon OID: 3300025057
• Scaffold ID: Ga0208018_100365
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12556
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F015201	Metagenome / Metatranscriptome	256	Y
F020341	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1003651	F001807	N/A	QLMTVLSIENVNIKDGYAEVTAVVDEMLLVYPATRFEPAEYGPAICEAIIELDPSEPIPLDEDGFCAYLDQVDPEWRILNLSNY
Ga0208018_10036513	F015201	GGAGG	MNQALIVYLVGQKKQAARKDVESKRAVKELKKQPAATF
Ga0208018_10036516	F020341	N/A	MKGFSSTKQSTRSSSYWVASYAKDNEDEPLGIHKKVLSYKPGQDKEVLMTKYCHSIMKTNPNVWEILVHQGPSEIPDSGDQIVIRLSREPFKGCSQLT
Ga0208018_10036518	F002985	N/A	MSYIISTWKEGKPYAVTACSQSNRFQLIPLDSEVALSKIFSHPYRAGAQQILTWINKNDHDLASEDLNVHDEAQFRK