NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207906_1033732

Scaffold Ga0207906_1033732


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1033732 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038419Metagenome / Metatranscriptome166Y
F049705Metagenome / Metatranscriptome146N
F084726Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0207906_10337321F038419N/AMLVQAIIVTWIMVTAPTPCPQEYLELGGDVIEYCELIPYGSGRQWSLKE
Ga0207906_10337322F049705AGGMVFKGVMVVILMLTSCSYDTKVVCDYRWHHKMTMKKLMQRCNYIPYGDAWVKKQGEEYGK
Ga0207906_10337323F084726AGGAGMANNAINLENIWTTIGAVTRDEVRLAVLQDEIEIHKSRLESREMGHLHTAIAVIERRIEEIT

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