Scaffold Ga0207898_1020905

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207898_1020905

Scaffold Ga0207898_1020905

Overview

Basic Information
Taxon OID	3300025049 Open in IMG/M
Scaffold ID	Ga0207898_1020905 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	829
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.567	Long. (^o)	-138.6676	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012984	Metagenome / Metatranscriptome	275	Y
F018017	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10209051	F012984	N/A	MDQLTFEPLTELQKQQYLSELGLEPVLSYYNNEIKKHGRVCFKSLELRTKRDRIFKLMREEYQELC
Ga0207898_10209052	F018017	GAG	LKNDSLNADNTTTKINSLWANQQKIVPIPPLSSLHLHGNHSSGLRICHTCRGERFVAIRSKWDNRLTYKKCMACSGNGSIDVRTLN

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