Scaffold Ga0207898_1001395

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1001395
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2531
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081767	Metagenome / Metatranscriptome	114	N
F099864	Metagenome	103	N
F103905	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10013954	F103905	N/A	MILKKDFESTFKEGFRLGQRMVRAKILYAQASDARQLGDEAMATFYADCAKQWSDLAHNAGRKFCPEVALESEQPVFDFGDPERLIDSEPDKDEFDVRKAG
Ga0207898_10013955	F081767	AGGA	MSERQDELNIQKFKSVAVRIETYRVLKKLASKDNRSTGMQITHLVEKEDKRQKRRAA
Ga0207898_10013956	F099864	AGGAG	VSAGKISWMIDENDWLTIIKVDGLAFPAPVNGEDAAKSRLKHMQKYKIGTQMSLEQFCNNEDYNSIMWSIVPSSKWTRSNADRRLVINV