NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1001191

Scaffold Ga0207898_1001191


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1001191 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2697
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004336Metagenome443Y
F006818Metagenome364Y
F056142Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0207898_10011911F056142N/AELMHAIVENLTPSDLFRWETPLSVSKMVPVANIENVTTNVLQEHNLAEITDEDGFGQKAYIEFHDDKLDFKPNFRRITIYTYHPKWIPMPEGAEPIGYEVAYQLSRDFKRDIYEKMDSQKNAYVDVVRP
Ga0207898_10011912F004336GAGMKFIRNMLFTTSRYPSTMGAGGQQDVDFCRYIEWMWFKRCMLLLGLSLGFGGLGLYVGYYYDDVVLEYGMMVWGVAWLYNGFLLFVMAISMILAMLKALIVKAFISPEVQVGQAATRTAQMMRKGGL
Ga0207898_10011913F006818AGGAGMTGPPQMVTYSRKPQQQAEAEQEKEVAPAPNILHRQPVAQRMMPTAEQMSDDELDLYVKRLTMRHKRLSRKWMGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFGL

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