Scaffold Ga0207898_1000027

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1000027
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8369
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103073	Metagenome	101	N
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10000276	F104992	AGGA	MTTGTRQYISRNGTTTDQGGADTDLTITKSSDKVQLVDPGGSGNNLDLIMVDVSETGVTTAFCEIYVQNEADADEQIQVRDGNNSDNVIGVIDQNFGAWFTWDGTGWTGSSSGLN
Ga0207898_10000278	F103073	GGA	MADSKNHFVKKQDETVVEVDVPGKDLKVLIPDNRYAYGDNESVAQMAQDVVGKHSTDEGARGAYEQAREQLETTDFKTLRREEAIRRVNAKKPKFTLVPDEDDFGVLKGVRVFTILNYPSGLQEM