Scaffold Ga0207905_1000884

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000884
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6584
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022460	Metagenome / Metatranscriptome	214	Y
F032719	Metagenome / Metatranscriptome	179	Y
F048317	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10008841	F032719	N/A	LTLAGLKEGLINYDADTGRMQLKNAELMKCFEIKGMDIVDCKIQGNVLNCDIFTSELINSSLFESNLFGSTDAADCKIEDSYVSKNVMVKDSYVFGPRGVFSGEMEGGIFRKGRATKMARFENTEIIEIEKI
Ga0207905_10008843	F048317	N/A	MASPVIRDIYSRDALAPKFNDNTLEVSDSLSQLILKIENCLFTSKGDVLGAPGMGANLDDLIFSLVLSENTIQNNINSQITAYCLPRLAGFSVDCKVSFFSTLERDGCLVDIFVNEQRVIGALF
Ga0207905_10008845	F022460	AGGA	MATVKDKRVGFPSLYRATYEHGWLLKNTGFDYAPNLLKNTMSKYMFRNRHLGTFLNDYLSPIMVFYINRVKYLRIYFNFAVPKWYQKIN