NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1000884

Scaffold Ga0207905_1000884


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1000884 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6584
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022460Metagenome / Metatranscriptome214Y
F032719Metagenome / Metatranscriptome179Y
F048317Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10008841F032719N/ALTLAGLKEGLINYDADTGRMQLKNAELMKCFEIKGMDIVDCKIQGNVLNCDIFTSELINSSLFESNLFGSTDAADCKIEDSYVSKNVMVKDSYVFGPRGVFSGEMEGGIFRKGRATKMARFENTEIIEIEKI
Ga0207905_10008843F048317N/AMASPVIRDIYSRDALAPKFNDNTLEVSDSLSQLILKIENCLFTSKGDVLGAPGMGANLDDLIFSLVLSENTIQNNINSQITAYCLPRLAGFSVDCKVSFFSTLERDGCLVDIFVNEQRVIGALF
Ga0207905_10008845F022460AGGAMATVKDKRVGFPSLYRATYEHGWLLKNTGFDYAPNLLKNTMSKYMFRNRHLGTFLNDYLSPIMVFYINRVKYLRIYFNFAVPKWYQKIN

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