Scaffold Ga0207905_1000883

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000883
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6588
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F035490	Metagenome	172	N
F058519	Metagenome	135	N
F092873	Metagenome	107	N
F096058	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_100088311	F015659	GGA	MKERTLQDAIKEFRNNIVDSDYAKLGAKGNYLTVGYRIRFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNSDKEFEKQQSVSIGRSLSILGFMGDEIATAEEMEDFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSTSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQKQITNRKI
Ga0207905_100088313	F058519	N/A	MANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNISVKECIADKEIQDKINSYVTVNMKDQMKFEFGVKFLEKICQGHVDNIKELPKQKWKTEVEYMKWIEPINIPFRMFIDLEGEIHLNDIKNKFPTVKFSPLKTKQTKDNPNRIGDWVCSHPRIDQRAFTSDLMQISLYSLTNGLKPTLSYASATDRILFTEDNCEELKPQNLKRWVNELIAYEIAWEKKLKAANGSVDELLWLNVPDFSEIRKGSFWWNSIPKEYMEDYLKTYV
Ga0207905_100088314	F092873	GAG	MNNILNKKIIEIATKSGYKSEFVESYMIKKELTPKGFTFRRPALDQLLKKTNKKISDFIKDTYLPKEQKNKFAQISKILNPKKNAPKYYTENDLAFDLSHWFNSFPNGDVLVSPEYFVGNNVQIPVVGSLYGNGQVGLHKAKEITKINIHPKYANCHAIESQIGSSRGYMRLFTPSKNVSHVANNRFGFAQDKISKIIWCGYIEPKSNGKYNILDKSYSTGKTYGASVENISLSWSAEIKAEYYPTFYNN
Ga0207905_10008832	F035490	AGGAG	MNKVKLGERIWINGKGKKQKTNLFTYYVNAEKNGKTFRKKVTKSSPNKRWLEKEAEKILLRIGNINPKNMNVILSVPLSYAWEVYSKKCRSRANEPTTGFSMTTFKEYSEHYKHIEKHCGDIDLTKVDVEYIADFVKKIDDLDFEYKKKIFHTFARIYETQVGMAISDPFKVNVFKTATFFKKEDKPKKKNTGKIDFEEWNFDRIKQIIDTVPFEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEITNSVDYIKGLAPPKTEAGYRELEISSSLKDKLIDYMNTLPEDQECIFLNSKGKFYDLKNMITYLDNALESLNLTLPVKKKTYFFRHWNVSYWCYHNKYTNPSDLAMHMGDLDLKFINTTYIKKYSTSKESVKYSEHQNNHYKWN
Ga0207905_10008833	F096058	AGG	MYFIIFKPKDKFITYTNQVFGNEEDAEFFAKRSFKRKDVWKIVPYDKEHIDLYWYKV
Ga0207905_10008837	F016879	AGGAG	MSVIKESFFEASFKTIEEFDSAEVASAKLNVSETANLQIMDIKLEKSVIKTNQEKEHGNATNEQHSKIISETK