Scaffold Ga0207902_1004220

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1004220
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1368
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008153	Metagenome	338	Y
F012032	Metagenome / Metatranscriptome	284	Y
F012880	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10042202	F012032	GAG	MTKQDFKNQVGMGFFSCKWLKNNGQVAKIKRGILGQYAWRFTNDPTPTNFKEHDNYVLAFRVGSGLLPEHARWVNINPNTVLEINRVAV
Ga0207902_10042203	F012880	AGG	MKFNAITLMWSTALMLLTFQLCLLWIDWEFTNTIVYKFVMLLDGFMFGMVMMDWSKN
Ga0207902_10042204	F008153	GGAG	MPKDLITMNNVNIQPLIENLVELVKDKKVTGELDNMISAKIPEKTSADWKLICGVLCNAIVEWVALNKDNEVDPKDLLKHLQSDIGYIMKRLGLM