Scaffold Ga0207901_1015152

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1015152
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1067
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10151521	F073426	N/A	VTVFAVLFYFSYKAPVLVSVPKVEKAIDMGIWSESNKGNSLAEK
Ga0207901_10151522	F036653	GGAG	MTPILVALGTVLSLYVFEPLWFDTRMHYHHDTYQSLKACNHASIQVEETTGRVCVPKDNHSGQVDLYLTK
Ga0207901_10151523	F103382	N/A	MLVIPAPHKMVDWTINEVPTQIQLIHENGTEVSYNATAVPCDYKPRSTNEMVFVSPQAYEDNRCYSIFDLSSPRFIRHPHYWHGVKNVLD
Ga0207901_10151524	F045801	GGAG	MFWIEIILSIWALIAIRLLARGHKLGPLVGWVGQVLWVSMWIFTEQYGFILIDTGLAYIYLEAYFRGKGRC