Scaffold Ga0207901_1002139

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1002139
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3503
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F030460	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10021392	F030460	GGGGG	MLRSEVITGIQALRYFLEKNHSGHPDDLAYYDEVLVEARLAVLKNEQDDPHAKY
Ga0207901_10021396	F006773	N/A	MSLETKSGLPWRSRRAEIVDYFVEVGTTPYGKYGLYKEMVNIGHDSRGKHLEMAESIRMSNPEIFKNLHLRQIVSRG
Ga0207901_10021397	F015360	N/A	MSKANMDYLWAPKDEKLVSGLLDLIGIVPVGKSQRYPTGVKYDTLVAICEVVASNEKTASMVASRTAELQSHRKAVGKAPSVDSVVSALQSGKMSEADLKEAMKKAGLI