Scaffold Ga0207889_1006047

Overview

Basic Information

• Taxon OID: 3300025042
• Scaffold ID: Ga0207889_1006047
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1193
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0008
  • Long. (^o): -145.0003

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017717	Metagenome	239	Y
F026025	Metagenome / Metatranscriptome	199	Y
F089401	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207889_10060471	F089401	GGA	MISIERGIKDMTDKNICQNPKCCQSNSLDRWNKKIDKYQSRKAKYKPRVNEYYRSVILEYFCTTSCAWNWAENNLENIIERKDCPNKILEKIIRQ
Ga0207889_10060472	F026025	GAGG	MLFKRGDKFTLVVKNKTHNGNPNKFTHLRYGVFDKNSKFLVSKNMIVFLDTTVHEYRHMKLTNIFAITNITRLDEECEKQTPTDTCKSKTCENSLIGWQSKINPLYCMDCG
Ga0207889_10060473	F017717	N/A	KKVYQGNPTSELIANVVHELGHMFDVLSVKILENRKRIVELETKVKELERSKNAL