Scaffold Ga0207889_1003300

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207889_1003300

Scaffold Ga0207889_1003300

Overview

Basic Information
Taxon OID	3300025042 Open in IMG/M
Scaffold ID	Ga0207889_1003300 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1840
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0008	Long. (^o)	-145.0003	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007005	Metagenome	360	Y
F011673	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207889_10033002	F007005	AGGAG	MDKTILVVEINQYSSGSKIYAIKKHANTLDKASEYLVSLNNLNEDKDISYELFNRFGQFEVDKIERVANDNK
Ga0207889_10033004	F011673	GGA	MTPERSLKILPIYLQPRILSAVSYIHKSPNTEIGLERINKVSRKLSDREMLYVLSLLAFDNLLDMVKDSEDFKKFVNIKRTIH

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