NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207889_1003300

Scaffold Ga0207889_1003300


Overview

Basic Information
Taxon OID3300025042 Open in IMG/M
Scaffold IDGa0207889_1003300 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1840
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0008Long. (o)-145.0003Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007005Metagenome360Y
F011673Metagenome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0207889_10033002F007005AGGAGMDKTILVVEINQYSSGSKIYAIKKHANTLDKASEYLVSLNNLNEDKDISYELFNRFGQFEVDKIERVANDNK
Ga0207889_10033004F011673GGAMTPERSLKILPIYLQPRILSAVSYIHKSPNTEIGLERINKVSRKLSDREMLYVLSLLAFDNLLDMVKDSEDFKKFVNIKRTIH

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