Scaffold Ga0207900_109151

Overview

Basic Information

• Taxon OID: 3300025029
• Scaffold ID: Ga0207900_109151
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-39 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 854
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9958

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054918	Metagenome	139	Y
F057670	Metagenome	136	N
F090609	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207900_1091511	F054918	AGAAGG	MPIDWDQLKPQVENLALEHICRRCKRIIPGAHYRIAGEDGKGNYHIECYERLK
Ga0207900_1091512	F090609	GGGGG	MSTATSLLLYRRLLDGLLNRLDESPLLGPKDYEWLVETLKELSEADPGFRQILAELKPKQCEGCSLTFTPHRPEQIYHDAYCRARANTRKTYYRQKGEKDAD
Ga0207900_1091513	F057670	AGGAGG	MTTENQQPQSRVRYRININRLAKGQLSFDCTVELEGPVELIGVDHDVPSRIALGKLQEAALEESDRLVAALQAKYPMGVE