Scaffold Ga0210056_1090187

Overview

Basic Information

• Taxon OID: 3300025022
• Scaffold ID: Ga0210056_1090187
• Source Dataset Name: Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1249
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044906	Metagenome / Metatranscriptome	153	N
F060596	Metagenome / Metatranscriptome	132	N
F086603	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210056_10901871	F086603	N/A	MERHTDFEKFKREYKKDFDIPVLSMKEKDIFMYLFLSLRKKMSKGIFPELYNSEIMFSKSDLKALILKNIVSFQNYKRGWIISMN
Ga0210056_10901873	F044906	N/A	MDNDNKKEHTTIQAKTNVANRLKKMLRVGVTYDDIIVDLIGYYRATK
Ga0210056_10901874	F060596	N/A	MENKKASIGAIPIPNEDIKKSESTKKKMAKNRTMVLLDRKIVDRLCCCKKRIGNTYNSVITNLLDKYENGQ