NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210056_1079071

Scaffold Ga0210056_1079071


Overview

Basic Information
Taxon OID3300025022 Open in IMG/M
Scaffold IDGa0210056_1079071 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1381
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016112Metagenome / Metatranscriptome249N
F016496Metagenome / Metatranscriptome246N

Sequences

Protein IDFamilyRBSSequence
Ga0210056_10790711F016496N/AMEDKKKEDKYFFKKGNKYQQKGSAGLRYGGTTPVAENKEKNLERLRCGWKPKTLICKDITISDDEEAFAVEFSKKVSEENDTYVDTFLIELAIAQILQVHRVYVYAKEKKISRDASRMIGTVLSTLREMNATKNARKEDNIKVTVNSDIMTLIQQNLNLISNDESKKGNNIDKK
Ga0210056_10790712F016112GAGGMWGSIEKVRNICGITKEQINDIVIHDMLEQTDRKVRDRVYIFRRLTMYMDKIATNKIRFDVNKIGDGNRDTSIDYTDISIYRKNNGVYELFPIQKLDVLSNEITFQTDIGENYEMIVEYFEDNFHFSIDTLSDASSLFAAAMCMRSLPLVEEDNKAKEYERRAKEIITRSSASFV
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