Scaffold Ga0210022_1144498

Overview

Basic Information

• Taxon OID: 3300025017
• Scaffold ID: Ga0210022_1144498
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 643
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037574	Metagenome / Metatranscriptome	167	N
F044906	Metagenome / Metatranscriptome	153	N
F086603	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210022_11444981	F086603	N/A	MERHTDFEKFKREYKKDFDIPVLSMKEKDIFMYLFLSLRKKMSKGIFPELYNSEIMFSKSDLKALILKNIVSFQNYKRGWII
Ga0210022_11444982	F037574	N/A	MTGIFADEVSEWTTITISKDTAKKLKEFFCGKETYNYVITFLLDYYDGKTYRF
Ga0210022_11444983	F044906	N/A	MKMDSDNKKEHTTIQAKTNVANRLKKMLRVGVTYDDIIVDLIGYYRATK