NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210022_1011241

Scaffold Ga0210022_1011241


Overview

Basic Information
Taxon OID3300025017 Open in IMG/M
Scaffold IDGa0210022_1011241 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4375
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N
F044301Metagenome154N
F050143Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0210022_10112413F050143N/AMAKCDWMTETDVKDAMVRGISNAGAAHTFGVNYPRQDPIQSAISAIQKGIWEKNFRDSIGKWEKKLALVTIEEWKAATTAAASMYAEKASTIGAEEWGKYYDKAKSVIESAAAEYVKSDKKKENMIKFWTDMQKLKNL
Ga0210022_10112414F044301N/AMAVTKEIAVGKYKDKISSDSFNKGVSAVTKSPAQQAVAQKDAFTKNTIAGKEVLIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNATKTLTAGKNAHAAVANMKKGTLSDSYERYLAAQKAVVAVYA
Ga0210022_10112416F019951N/AMTILFKNFRINVSGNNVKCEANNKLYVQKGQKIILHAIQIAPELNTADENVFIMLYRDQEQLAGEGIYHAVIDDYTHTIEFDADAVEGQTFVTKAWGPNAKIIHGVYIYEITS
Ga0210022_10112417F026802N/AMYYYVPFSRNLTQGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWCQPAFIPLDHDIRADHQILLETFTWGANFISVRGHFVYS
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