Scaffold Ga0255267_1024415

Overview

Basic Information

• Taxon OID: 3300024867
• Scaffold ID: Ga0255267_1024415
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1387
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009396	Metagenome / Metatranscriptome	318	Y
F018000	Metagenome / Metatranscriptome	237	Y
F033712	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255267_10244151	F018000	N/A	MAEILLNSQSPITHQVFWNGEITVLDTAPTVKLYDITIDPAINPAINPNTPLQLLTSVADENNPGTYITYVPYQYTNRNRTLRLEWYYTIGSTNVTRSDEVYVVTPYVDFNHVQDLGFSVDSSDPNYKSYKELIRAERYARKQIE
Ga0255267_10244152	F009396	N/A	LYDDLYVVYGYGSDVLPLPAKLNTLHELYANDSLLLDNLNNINNLSYDVIIAESGYGIRIDRSSIVDNTVYVANGMVPPSIYDVNGVFQTNVPYKVQGKFGWEKVPDEVELAGIELMKDYFTKDQVWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII
Ga0255267_10244153	F033712	GAG	MNDLIDSVLSMKLDVYRQSEIQDADTGAIKREWNYHRTVDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLIMREKVTNIRDAHDNVIWAEINFPTETPTVFEVV