Scaffold Ga0256340_1022105

Overview

Basic Information

• Taxon OID: 3300024865
• Scaffold ID: Ga0256340_1022105
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1609
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F018000	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256340_10221052	F018000	N/A	MAEILINTQSPITHQVFWNGDIAIPDTTPVVKLYDITNDPAISPPISPTHLLASLTSVADENNPGTYIVNIPYQYTNRNKTLRLVWEYQVSGTSIQRSDEVYVVTPYVDFNHVQDLGFSMDSSDPNYKSYKELIRAERYARKQIEQYTGQNFYLYDDLYVVYGYGSDILPLPAKLSSLHELYEAASESGIAQTIWNLQMGL
Ga0256340_10221053	F001106	N/A	MSFETLKVSELKKVAEDFGVEIDGLKNKTDIIAALSEEGVTWAVYQKTVNDLEEAEDMSVEVLPKFDPKKEQPEDTVLVKMERDNFRYDIQGFTFTKEHPYMAMNKEQAQAIFDKEAGFRLATPKEVQEFYH