Scaffold Ga0255282_1012475

Overview

Basic Information

• Taxon OID: 3300024850
• Scaffold ID: Ga0255282_1012475
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1533
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255282_10124753	F053995	AGGAG	MPNVNRLSKGEVAVGALQVGTNDMVYGIEFGTVEIDPAAINATTRGGTTFTLTGAATTDIIIVNPPSTLNDDLIFCGAAVTAADTVTVYLYNPTAGSINQAAAT