Basic Information | |
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Taxon OID | 3300024567 Open in IMG/M |
Scaffold ID | Ga0256307_1066642 Open in IMG/M |
Source Dataset Name | Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8d (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 849 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oregon | |||||||
Coordinates | Lat. (o) | 46.1812 | Long. (o) | -123.1834 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F080126 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256307_10666421 | F080126 | GGAGG | MKKITLPLAVVALVGLYAGTASAQCAFDVAKAKGIKSSMVRDYASCPGTEHPTSNTETEGGTEACTPVIPSEVGGNGSLYSYGPKGKCDVNVSAKLVKDCALAVDANGASLGLQSGPCHITYVSSKCGDILGTDGVTPIGATDAGWSLATLTRATFDDATNGDMTVIDFPVTFNYSIPSNGKISVKSSSAEALIPLVGVNNADLPACTSLQMVDISIKDPDGLPFAKQGGA |
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