Scaffold Ga0255236_1001454

Overview

Basic Information

• Taxon OID: 3300024563
• Scaffold ID: Ga0255236_1001454
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4789
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F074450	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255236_100145413	F000716	N/A	KMEKLKQQIRNYQLQSGKTYMQYEQDKYSIYQNYLYKRALYGLDALNQEELATMCSKKKQRIVNVYKRAQVVLNTFKQKLTIKYSNSLFNILFPNSNLTKELVNLNETDEKFKNTLTFKDLNIDKDQIISIFIAEGILPKNFLSLKEAPVSLPMLKNANKA
Ga0255236_10014546	F074450	N/A	MEDYTKEDVLQALSKITLNVRKRVLVDQRSYLIGILAYRFMMTEHTIAKFTGLNRNRVNYNKKLALDFYKDKSYMQNVYVYAQMFPFDFSIIMRGGSISDRSVRVELDLDRKFYNKLKAAGAIKGQSDIRLIIKFLLEKSLTIWEE