Scaffold Ga0255242_1083844

Overview

Basic Information

• Taxon OID: 3300024554
• Scaffold ID: Ga0255242_1083844
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 678
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255242_10838441	F028145	N/A	MKMFLVFFINLAVSLLSSILLYKSFKVDVSPTIISIGLIVAYMFLPQRFHDWIAEK
Ga0255242_10838442	F014847	AGG	MEFESNTDILKDLMDQLHTLHKENARLMQKIEDLEKHNEELNRKLKSIQALFL
Ga0255242_10838443	F016528	N/A	MINNNELFAKVLADNPLPYRFGDKVNTNRGIGYISGYNFKDREKTWKFTIRPYGLPNYYIDVETVYRKVE