Scaffold Ga0256308

Basic Information
Taxon OID	3300024549 Open in IMG/M
Scaffold ID	Ga0256308_1000006 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8d (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8d (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24247
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

24247

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

46.1812

Long. (^o)

-123.1834

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0256308_100000617	F034904	N/A	MRKTLAQAKNSTIAQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRICVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQYRDSIETCYFQVAPELAADAGKRVLLQGIDPVTNEAIRTYDTVSGEYVWGEYVTLPNPNITPFVRTTKQFKKPGLTGAQKPLTQGRLRISTYNGTVTTEVALWGPSEENPEYRRTYLIGMPEVCGGTSGCNAQAENDCIDHGDGCVPPDEECTNTVVEAIVRLEFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLSLRSLRNELEAYSPNERSVINVQPFGSAKTEFIFGGF
Ga0256308_100000620	F042808	N/A	ESCDGLSMGSSVMVAEKNRLVDGLLTSEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWLKGLTFPDPTVVTDSGYYNAAVQDAFKTGYFQGCGAYVNDDGTPYLFASISGKMFRIDIENNFLVSDQTPQGGTFTVDTRGRVANIATYTCSVPHGLFPGMVVRLPERVGASFPEGFFGDFVIQNTPTPTTFTTYSPGVDAGPLLGPSFTGYWLQANNPNADHVFFQQAENWLIVQDQLNAPYLFDGTTFRRATGEEVPVGGPMAYGKGRLWVASGSEYYGGDLVYGDPAYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFGANLDTSLGDGDLLVFTPTATYAFAAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPMNGDLIFRAQDGIRSLIYARRDFTEWGNTPISRQVVRALAYDTEFYLKAASSVNFDNRMLMTIQPQKVNGRGVVHRGLVVMDFDLVSGMGRKLPPAWEGVWTCADILQMLTVRVRNSERCFVFGLDQGKIGLYEVTRTGQFDFDGFDDSPIEWIIETRSLTFAEPANKKRLMSAEQWYDQVMGNIEAKVYFKANEGECWHPWAEIKDCAKYRNCEPGEVACPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRIAMVAQRLQEDIYGDLSRVACPLLSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0256308_1000006

Overview

Ecosystem & Geography

Associated Families

Sequences