Scaffold Ga0256342_1100840

Overview

Basic Information

• Taxon OID: 3300024548
• Scaffold ID: Ga0256342_1100840
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 646
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004115	Metagenome / Metatranscriptome	452	Y
F056572	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256342_11008401	F056572	GGAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGYFAK
Ga0256342_11008402	F004115	N/A	QSAKIRISISLDTPLFYLSADSVHQKIGTTLSLTRNHNQHQWCDYCKMRWGQMKDGTWHHKAQVPAVWKVQSETPTRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS