Scaffold Ga0255048_10013153

Overview

Basic Information

• Taxon OID: 3300024518
• Scaffold ID: Ga0255048_10013153
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4333
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured Mediterranean phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022669	Metagenome	213	Y
F029130	Metagenome	189	Y
F098219	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255048_1001315311	F022669	GAG	MIKTFQKLKEVNKSYFTPENKRFFNDINYKVLMGGKSKTRFLIQHTYQFSDMFDGIKKAVFVIKPITTDGKILPTIETLKELNQVKQYMKGA
Ga0255048_100131538	F029130	AGGAG	MTTDKPNFILVPNRLDPKYWIRTKRHNADNLILAKMIAKHLIMHRIWNGLSQKKIAVEDLQVTHQQYQKIEAITNDVFYVQVARIFKNRGWSKEVLEADPYAVLDEWLKRDYGNLESWALPDKYHKIIDAWKLLDLKAEKNYYKK
Ga0255048_100131539	F098219	GGA	MTRPYLILKRYNLNNGGSNYKLENVTNKHCPKCNELLFNEIHKDMDYPYVCLLCDENFYNIELRVNGNKSDVDLLIEEVRSSK