NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255144_1069162

Scaffold Ga0255144_1069162


Overview

Basic Information
Taxon OID3300024513 Open in IMG/M
Scaffold IDGa0255144_1069162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)585
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007688Metagenome / Metatranscriptome346Y
F036144Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0255144_10691621F036144N/AIMENGTPLVISPKHAERLVFEVDGGTVFMPKGQSVKIKRPGGTAATNQFTLAHGKFFSSNLVGLSIRKSGFQRIFNAGMAKSLRIPTNIKRVQFSFSPNAIRAQADAALSQSFGGVL
Ga0255144_10691622F007688GGAGGMTANYKLDAMLELRKFLWNELKTRNIFDDEDYWSDNLNENIIPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYEDNWMI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.