NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255152_1016200

Scaffold Ga0255152_1016200


Overview

Basic Information
Taxon OID3300024503 Open in IMG/M
Scaffold IDGa0255152_1016200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1462
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042290Metagenome / Metatranscriptome158Y
F067537Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0255152_10162001F042290N/AYRGCKYNQEDQAKTDRAWWNLAHRPWLCLTYRNVCYFPFVTGGQIK
Ga0255152_10162004F067537N/AATKRQFDYNIGDRVAERPKTHGIFATRLESEQRIKQYRTQRYGEVVGINYKPDSRGNRQRFVLVKWDHLNTATEHAVARICPVSELERLSKNTLVPGE

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