Scaffold Ga0255203_1002506

Overview

Basic Information

• Taxon OID: 3300024491
• Scaffold ID: Ga0255203_1002506
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2868
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012017	Metagenome / Metatranscriptome	284	N
F057334	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255203_10025062	F057334	GGA	VCVMVTKRAVDEWLIEPDVEGVREYARLSIYAEPEGLNIDGQGLIPWSQLESSRLTYAVRMKKRHAAR
Ga0255203_10025063	F012017	AGG	VFHALQLWFSYPPMAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLISHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDETGLQRVERASIGFSKIKVPVFKKIALANVDRVAMLVDPNKAPKLVPELFPMELKGRNTPEHRMKQIWAALSEVKNDEALRARIERELTIRYDEPNAFISEDFGFCDLARAAGYDIWMDTLMVLGHQASVVVPVETAKLLEMLSEPWRKEELAVIKQQMLEAQAAKKK