NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255185_1031755

Scaffold Ga0255185_1031755


Overview

Basic Information
Taxon OID3300024490 Open in IMG/M
Scaffold IDGa0255185_1031755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032248Metagenome180Y
F062697Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0255185_10317552F062697AGGAGGMGNILTSTGIISKKNLTVISLWDILDYMELRDEEVEAISDYGLSGVSWGDAPYTLIGNNFALDCIVNGLMAYYDELQMDADEYGQPSRSLPARLYTRKDIEQMFWAVVGEDDYINLESH
Ga0255185_10317553F032248GGAGMRLCFKCKCVIPTERIDVLPDTQTCVQCSGVEKYVGAMIFDHKTAGRLEYVNPKNKQAVETLKRFVNR

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