NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209986_10052142

Scaffold Ga0209986_10052142


Overview

Basic Information
Taxon OID3300024433 Open in IMG/M
Scaffold IDGa0209986_10052142 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2418
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameAtlantic Ocean: Black Sea
CoordinatesLat. (o)44.288Long. (o)34.983Alt. (m)Depth (m)2075
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066431Metagenome126Y
F079580Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209986_100521423F079580N/AMEENTQPYNEVGDQVGLHNASQQGALIANQSRQLQYQMEEGEKNLAEAQLDCNETLTKINHLLKQDVLKVNEGGVLDWEDIDDERKRVLTNEGVDKIMQVMQSYINKETLLSNFDEKTIARRMLQFSLSFSALIFLKYEIFFRSPTLIECKEILKERIDEKISNKQMTAEILGKEFNEIQIKKEILNDMEPRIEYELNKIKAEKTKLNLREFEMIFTQLNALVEATHNRAWKGEERGSLRRHFNISEVIGGRSPMPEKQGGFFGWGKR
Ga0209986_100521425F066431GGAGGMVDMRKKRTLTLRADPDFKKWIDDLSRKKSFQEKDKITTSRITEAIYKQYAKYPELIEEINRSKLGRWKSR

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