NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228650_1140856

Scaffold Ga0228650_1140856


Overview

Basic Information
Taxon OID3300024417 Open in IMG/M
Scaffold IDGa0228650_1140856 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 62D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F077379Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0228650_11408561F077379N/ATKKLTATLCTTTNTIFVHKNNKAHLQYTVNSSKVIRNANAQQLQAFNSLQSTAMQKTKNFIVNNALVKQLLNN
Ga0228650_11408562F003769GGAGGMQQLKTITVKTSTKQDSVHMETLYAIINNCYNNLQVMEADCTSASYFINSANIFAQLQQLYCDNETNDYVSIQSVMEVFASNITYYDESSLYTQVVENTAMQKVLLENYV

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