NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233393_1098237

Scaffold Ga0233393_1098237


Overview

Basic Information
Taxon OID3300024413 Open in IMG/M
Scaffold IDGa0233393_1098237 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 21D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)634
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029762Metagenome / Metatranscriptome187Y
F050394Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0233393_10982371F029762N/ANFIVSWVKKEEDAPVFKPLDISNLDKTVDVLSKLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRIFATVGYDQMNLAVVEEPINLESIKGANTEDL
Ga0233393_10982372F050394N/AMVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYEDIEAKVLAETLNVSEQGLFKLVKYTLAMYSAKAAISI
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