NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228628_1019469

Scaffold Ga0228628_1019469


Overview

Basic Information
Taxon OID3300024359 Open in IMG/M
Scaffold IDGa0228628_1019469 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1680
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010466Metagenome / Metatranscriptome303N
F040112Metagenome / Metatranscriptome162N
F063692Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0228628_10194691F040112AGGMRKVGTCLIILVSFLLGSCVREPLIGEVLDIAEIQPEFEWVTLKSGKEEGFLEPLMKFEVYRTTEQSFNQIQNHLNGHLKRIEPGYYLNNEFDDFLRENGLKILNVNSSMISSNPFDNHYRVYFLSDSQTLAVFWINSI
Ga0228628_10194692F063692GGAMKKLVAVVFVVITLVVMVLFSRAQDREQQLVNDRYKAACDFYFSGVVVDVANDFDVHRCMLRLELDTTTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSASSQANFIRPGMRYTFDGQVDSAYLFFADTLVESWPIQISTFELMDVARFHQIPMSGGKTAVPRNRGWWPRVR
Ga0228628_10194693F010466N/AMRKLRFVVVFLLVQLNVFAQSAELEVGYDLAQEMLQWEELNPTHKAESDRYLKSMNYAFGFNGPDIEEVNHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHIARSDSDPIYTAVLLLEYVESIGSSGVEKRRSMLLAYVQAYEEEIGIEFAKRIYLFLGEK
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