NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255169_1028552

Scaffold Ga0255169_1028552


Overview

Basic Information
Taxon OID3300024356 Open in IMG/M
Scaffold IDGa0255169_1028552 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037206Metagenome168Y
F102853Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0255169_10285521F037206N/AQCGSKTHVVNTTQQPGGIRRQRRCPSCKNNAYSAEVWVAGNVMVGKSIYTKDEAALIKKKGVDARRANEDRRKDDVT
Ga0255169_10285523F102853AGGMKELALVYYAAIVVATIGFLAFFVPADHSRPTPSDCVVAEISPDMSARDREVCRQLRQHRHRM

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